Tools

Super Codons Oligo Mix Generator
Super Codons and Super Nucleotides allow researchers to create diversity in their DNA constructs matching a chosen amino acid distribution.

Suns: The Structural Search Engine
Suns provides the missing search engine for the Protein Data Bank, complete with a Pymol interface.

E(Z) Depth Potential Position Finder
Calculate the energy minimum of a sequence in standard alpha-helix conformation.

Creates helical wheel diagrams for coiled coils of any oligomerization state and orientation.

?-Peptide Rotamer Libaries
Supplementary materials for our paper discussing rotamer libraries for beta-peptide helices. We have calculated libraries for the C₃ and C₂ positions for both D/L chiralities for 3₁₄, 3₁₂, 3.0 ?-helices. In addition, we present a comparison of libraries computed for different secondary structure environments.

OSTRICh
Use low resolution experimental data to predict the structure of homo-oligomeric transmembrane helical bundles.